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Recents Publications (2011-Present)

  1. Hayashida M, Sartsanga C, Phengchat R, Malac M, Harada K, Akashi T, Fukui K, Ohmido N. Higher-order structure of barley chromosomes observed by electron tomography. Micron. 2022 14;160:103328. doi: 10.1016/j.micron.2022.103328

  2. Ohmido N, Dwiranti A, Kato S, Fukui K Applications of image analysis in plant chromosome and chromatin structure study. Quantitative Biology 2022 10:226-238 doi: https://doi.org/10.15302/j-qb-021-0285

  3. Hayashida M, Sartsanga C, Phengchat R, Malac M, Harada K, Akashi T, Fukui K, Ohmido N (2022) Higher-order structure of barley chromosomes observed by electron tomography. Micron. 2022 Jul 14;160:103328. doi: 10.1016/j.micron.2022.103328

  4. Kovacs, Z (Kovacs, Zoltan); Muncan, J (Muncan, Jelena); Ohmido, N (Ohmido, Nobuko); Bazar, G (Bazar, George); Tsenkova, R (Tsenkova, Roumiana) Water Spectral Patterns Reveals Similarities and Differences in Rice Germination and Induced Degenerated Callus Development PLANTS-BASEL  10(9): 1832  doi: 10.3390/plants10091832 SEP 2021

  5. Liaw Y, Liu Y, Teo C, Cápal P, Wada N, Fukui K, Doležel J, Ohmido N.: Epigenetic distribution of recombinant plant chromosome fragments in a Human-Arabidopsis hybrid cell line. Int J Mol Sci. 22:5426. doi:  10.3390/ijms22115426. 2021    

  6. Liu Y, Liaw YM, Teo CH, Cápal P, Wada N, Fukui K, Doležel J, Ohmido N. Molecular organization of recombinant human-Arabidopsis chromosomes in hybrid cell lines. Sci Rep.11(1):7160. doi:  10.1038/s41598-021-86130-4. 2021

  7. Siregar AY, Sartsanga C, Arifudin FS, Phengchat R, Salamah A, Ohmido N, Fukui K, Dwiranti A. Calcium ion significance on the maintenance of barley (Hordeum vulgare) chromosome compaction. Micron. 145:103046. doi: 10.1016/j.micron.2021.103046. 2021

  8. Sartsanga C, Phengchat R, Fukui K, Wako T, Ohmido N. Surface structures consisting of chromatin fibers in isolated barley (Hordeum vulgare) chromosomes revealed by helium ion microscopy. Chromosome Res. doi: 10.1007/s10577-021-09649-2. 2021

  9. Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, Kudrna D, Wing R, Yano K, Nonomura KI, Sato Y, Kurata N Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels. Genome Biol Evol. 12(4):413-428. doi: 10.1093/gbe/evaa037. 2020

  10. Dwiranti A, Arifudin FS, Takata H, Ohmido N, Fukui K Application of the Chromosome Image Analyzing System (CHIAS) for Straightening Cation-treated Bent Chromosomes. Microsc Res Tech. 83(11):1411-1416. doi: 10.1002/jemt.23533. 2020

  11. Hayashida M, Phengchat R, Malac M, Harada K, Akashi T, Ohmido N, Fukui K Higher-Order Structure of Human Chromosomes Observed by Electron Diffraction and Electron Tomography. Microsc Microanal. 20:1-7. doi: 10.1017/S1431927620024666. 2020

  12. Phengchat R, Hayashida M, Ohmido N, Homeniuk D, Fukui K. 3D observation of chromosome scaffold structure using a 360° electron tomography sample holder. Micron 126, 102736. 2019

  13. Polosoro A, Enggarini W, Ohmido N Global epigenetic changes of histone modification under environmental stresses in rice root. Chromosome Res, 27: 287-298. 2019  doi: 10.1007/s10577-019-09611-3

  14. Pachakkil B, TerajimaY, Ohmido N, Ebina M, Irei S, Hayashi H, Takagi H: Cytogenetic and agronomic characterization of intergeneric hybrids between Saccharum spp. hybrid and Erianthus arundinaceus. Sci Rep, 9(1):1748. doi: 10.1038/s41598-018-38316-6. 2019

  15. Ohmido N, Iwata A, Kato S, Wako T, Fukui K: Development of a quantitative pachytene chromosome map and its unification with somatic chromosome and linkage maps of rice (Oryza sativa L.). PLoS One, 13:e0195710. 2018

  16. Kudoh T, Takahashi M, Osabe T, Toyoda A, Hirakawa H, Suzuki Y, Ohmido N, Onodera Y:  Molecular insights into the non-recombining nature of the spinach male-determining region. Mol Genet Genomics, 293:557-568. 2018

  17. Ohmido N, Makigano E, Tsuchimoto S, Fukui K: Flowering genes and homeotic floral genes analysis in Jatropha. Chapter 9, In: The Jatropha Genome. (ed. Tsuchimoto S) Springer, 2018.

  18. Ohmido N, Wako T, Kato S, Fukui K: Image Analysis of DNA fiber and nucleus in plants. Meth Mol Biol, 1469:171-180, 2016

  19. Ohmido N, Ueda K, Fujii K: Chromosome instability of allopolyploid resynthesized Brassica napus.  Chromo Sci, 18: 79-84, 2015

  20. Rosa S, Ntoukakis V, Ohmido N, Pendle A, Abranches R, Shaw P: Cell differentiation and development in Arabidopsis are associated with changes in histone dynamics at the single-cell level.  Plant Cell, 26: 4821-4833, 2014

  21. Hamano T, Dwiranti A, Kaneyoshi K, Fukuda S, Kometani R, Nakao M, Takata H, Uchiyama S, Ohmido N, Fukui K: Chromosome interior observation by focused ion beam/scanning electron microscopy (FIB/SEM) using ionic liquid technique. Microsc Microanal, 10:1-8, 2014

  22. Alipour A, Cartagena J, Tsuchimoto S. Sakai H, Ohmido N, Fukui K: Identification and characterization of novel gypsy-type retrotransposons in a biodiesel crop, Jatropha curcas L. Plant Molecular Biology Reporter, 32: 923-930, 2014

  23. Rosa S, De Lucia F, Mylne JS, Zhu D, Ohmido N, Pendle A, Kato N, Shaw P, Dean C:  Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalization. Genes Dev, 27:1845-1850, 2013

  24. Alipour A, Tsuchimoto S, Sakai H, Ohmido N, Fukui K: Structural characterization of copia-type retrotransposons leads to insights into the marker development in a biofuel crop, Jatropha curcas L. Biotechnol Biofuels, 6:129-142, 2013

  25. Ohmido N, Shimoura A, Kato S, Isobe S, Tabata S: Kudzu (Pueraria lobata Ohwi) Karyotyping using FISH and chromosome image analysis system IV. Chromo Sci, 16:1+2 17-21, 2013.

  26. Wako T, Kato S, Ohmido N, Fukui K: Advances in imaging methods on plant chromosomes. In: Plant Image Analysis: Fundamentals and Applications. CRC Press (eds. Gupta SD, Ibaraki Y) 299-328, 2013.

  27. Ohmido N, Tuna M: Use of fluorescence in situ hybridization (FISH) method in Maize and rice. In: Melez Misirla, BISAB (eds. Korkut KZ, Eser V, Ankara LB), 71-84, 2013.

  28. Fujii K, Ohmido N: Stable progeny production of the amphidiploid resynthesized Brassica napus cv. Hanakkori, a newly bred vegetable. Theor Appl Genet, 123:1433-1443, 2011.

  29. Sato, S., Hirakawa, H., Isobe, S., Fukai, E., Watanabe, A,, Kato, M., Kawashima, K., Minami, C., Muraki, A., Nakazaki, N., Takahashi, C., Nakayama, S., Kishida. Y., Kohara, M., Yamada, M., Tsuruoka. H., Sasamoto, S., Tabata, S., Aizu, T., Toyoda, A., Shin-I, T., Minakuchi, Y., Kohara, Y., Fujiyama, A., Tsuchimoto, S., Kajiyama, S., Makigano, E., Ohmido, N., Shibagaki, N., Cartagena, J.A., Wada, N., Kohinata, T., Atefeh, A., Yuasa, S., Matsunaga, S., and Fukui, K., Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L., DNA Research, 18, 65-76, 2011.

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